Causal Discovery via Quantile Partial Effect

arXiv stat.ML / 4/7/2026

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Key Points

  • The paper proposes a causal discovery framework using Quantile Partial Effect (QPE), a quantity from conditional quantile regression that captures covariate effects across different conditional quantiles.
  • It proves identifiability of cause and effect from the observational distribution under a finite linear-span assumption on the QPE, generalizing earlier identifiability results from Functional Causal Models (FCMs) with specific noise structures.
  • The approach avoids explicit reliance on causal mechanisms, noise models, or even the Markov assumption by using asymmetries in the observed distribution shape induced through QPE.
  • For bivariate settings, the authors show that causal direction can be determined by performing basis-function tests on the estimated QPE, and they report empirical success on many benchmark bivariate datasets.
  • For multivariate causal discovery, the method links QPE to score functions and argues that (under assumptions about the second moment of QPE) Fisher Information is sufficient to determine causal order, validated on synthetic and real datasets.

Abstract

Quantile Partial Effect (QPE) is a statistic associated with conditional quantile regression, measuring the effect of covariates at different levels. Our theory demonstrates that when the QPE of cause on effect is assumed to lie in a finite linear span, cause and effect are identifiable from their observational distribution. This generalizes previous identifiability results based on Functional Causal Models (FCMs) with additive, heteroscedastic noise, etc. Meanwhile, since QPE resides entirely at the observational level, this parametric assumption does not require considering mechanisms, noise, or even the Markov assumption, but rather directly utilizes the asymmetry of shape characteristics in the observational distribution. By performing basis function tests on the estimated QPE, causal directions can be distinguished, which is empirically shown to be effective in experiments on a large number of bivariate causal discovery datasets. For multivariate causal discovery, leveraging the close connection between QPE and score functions, we find that Fisher Information is sufficient as a statistical measure to determine causal order when assumptions are made about the second moment of QPE. We validate the feasibility of using Fisher Information to identify causal order on multiple synthetic and real-world multivariate causal discovery datasets.