Fusion Learning from Dynamic Functional Connectivity: Combining the Amplitude and Phase of fMRI Signals to Identify Brain Disorders

arXiv cs.AI / 3/27/2026

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Key Points

  • The paper proposes MSFL, a multi-scale fusion learning framework that combines two dynamic functional connectivity (dFC) features from resting-state fMRI: sliding window correlation (amplitude-based) and phase synchronization (phase-based).
  • The approach aims to improve brain-disorder detection by capturing both amplitude correlations (SWC) and phase coherence (PS) that reflect complementary aspects of neural dynamics.
  • MSFL is evaluated for classifying autism spectrum disorder (using ABIDE I) and major depressive disorder (using REST-meta-MDD), and it reports significant performance gains over comparative existing models.
  • The study includes explainability using SHAP, finding that both amplitude-derived and phase-derived dFC features contribute to the classification decisions.
  • The work positions improved dFC feature fusion as a promising direction for machine-learning-based diagnostic support from fMRI time-series data.

Abstract

Dynamic functional connectivity (dFC) derived from resting-state functional magnetic resonance imaging (fMRI) has been extensively utilized in brain science research. The sliding window correlation (SWC) method is a widely used approach for constructing dFC by computing correlation coefficients between amplitude time series of signals from pairs of brain regions. In this study, we propose an integrated approach that incorporates both amplitude and phase information of fMRI signals to improve the detection of brain disorders. Specifically, we introduce a multi-scale fusion learning framework, namely MSFL, which leverages two complementary dFC features derived from SWC and phase synchronization (PS). Here, SWC captures amplitude correlations, while PS measures phase coherence within dFC. We evaluated the efficacy of MSFL in classifying autism spectrum disorder and major depressive disorder using two publicly available datasets: ABIDE I and REST-meta-MDD, respectively. The results indicate that MSFL significantly outperforms existing comparative models. Moreover, we performed model explanation analysis using the SHAP framework, which showed that both types of dFC features from SWC and PS contribute to detecting brain disorders.

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